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Bioinformatic Analysis Serives
Genome assembly
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Genomic WEB DB
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Integrated WEB DB for Breeding
WEB DB LIST
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Technology Introduction
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XENOTYPE lnc.
LED Lights for Plant Growth
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Signal transduction metabolic pathway check kit (Pathway Check Kit)
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Target gene DB
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Bioinformatic Analysis Serives
Genome assembly
Structural variant
Population genomics
Molecular marker development
Gene profiling
Web DB integration
Genomic WEB DB
Comparative genomic WEB DB
Integrated WEB DB for Breeding
WEB DB LIST
PHENOTYPING
Technology Introduction
Case Studies
GENOTYPING
XENOTYPE lnc.
LED Lights for Plant Growth
Our Garden, PODZPODZ
Products
Signal transduction metabolic pathway check kit (Pathway Check Kit)
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Bioinformatic Analysis Serives
Structural variant
Structural variant
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Genome-wide SNP/Indel/SSR
General structural variation analysis
Mutation structural variation analysis
Genome Editing
Resequencing data를 이용한 SNP,Indel analysis
단일 염기 다형성 (Single Nucleotide Polymorphism; SNP)이나 small insertion/deletion polymorphism 은 유전체에서 가장 빈번하게 발생하는 다형성으로, 유전적 다양성 및 표현형 변이에 기여하고 있습니다. 기존에 Reference가 있는 경우, Resequencing을 통해 유전체 수준에서의 SNP와 small In/del 등의 변이를 탐지할 수 있습니다.
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RNA data를 이용한 SNP,Indel analysis
단일 염기 다형성 (Single Nucleotide Polymorphism; SNP)이나 Small insertion/deletion polymorphism 은 유전체에서 가장 빈번하게 발생하는 다형성으로, 유전적 다양성 및 표현형 변이에 기여하고 있습니다. SNP와 Small In/del 등의 변이는 RNAseq 데이터를 통해서도 분석이 가능합니다. Reference가 있는 경우에는 Raw read를 Reference genome 서열에 mapping 하여 변이를 탐색하고, Reference가 없는 경우에는 Assembly를 통해 작성된 서열을 이용하여 변이를 분석할 수 있습니다.
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SSR analysis
단순 반복 염기 서열 (Simple Sequence Repeat; SSR)은 주로 식물에서 많이 사용되는 분자마커의 한 종류입니다. 유전체 내에는 2-10bp 정도의 특정 서열이 반복되는 영역이 존재하는데, 해당 영역은 종 (Species)마다 반복수의 변이가 존재합니다. SSR 마커는 분석 대상 식물의 Genome 또는 RNA sequence를 이용하여 sequence 내에 반복되는 서열을 탐색 후, 개체 간의 SSR 변이를 분석할 수 있습니다.
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